Did you try rebooting again? If it don't register it right then, its probably all saved as backup.
Your computer will save configue's and stuff so you can go back and fix problems. Take for example, you were screwing around and accidently deleted some files on windows you needed and screwed the comp up. Well you could go back to the save points on the computer and refresh and they'd be back. So that might be where they are since your computer crashed after you deleted that stuff.
I've had the same thing happen and had to go back and un-install and delete items again cause I didn't get to reboot after deleting it all.
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