I think the GameCube has the Wii U beat.
I know Wii U has Captain Toad and now Yoshi is made of yarn instead of Kirby or something, but it seems like Nintendo was creatively firing on all cylinders in the GameCube days. They debuted Pikmin. They took chances on games like Chibi Robo. They published titles like Eternal Darkness and Geist. They pushed hard for exclusive content (or at least timed exclusives), such as the Capcom arrangement. They brought Animal Crossing to the US. It was a genuinely exciting time to own a Nintendo console.
Sunshine and 3D World were both great so let's call that a draw. GC had Wind Walker, Wii U may or may not be getting an original Zelda game, but hey, there's HD Wind Waker. GC had Metroid motherfucking Prime, and then another Metroid Prime.
Unless Donkey Kong Tropic Freeze is this underrated masterpiece that undoes all of the above, I'm just not seeing a best-ever first party library. Not trying to shit all over it, but it's far from the pinnacle.
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